Introduction

Breakfast just got a whole lot more exciting! With busy mornings becoming the norm, more people are turning to healthy, make-ahead options that don’t skimp on flavor. Enter egg cupcakes with yogurt—a simple, protein-packed breakfast that’s as delicious as it is nutritious.
In this post, we’ll walk you through everything you need to know about making these tasty little bites. From the health benefits of eggs and yogurt to a foolproof recipe and handy tips, you’ll be whipping up a batch of these egg cupcakes in no time. Whether you’re meal-prepping for the week or looking for a kid-friendly breakfast idea, this recipe has you covered. Let’s get cracking!
Why Choose Egg Cupcakes with Yogurt?
Health Benefits
Eggs and yogurt are a match made in breakfast heaven. Eggs are a fantastic source of high-quality protein, vitamins like B12 and D, and essential minerals such as selenium. Yogurt, especially Greek yogurt, adds a creamy texture and a boost of probiotics, which are great for gut health. Together, they create a breakfast option that keeps you full and energized all morning.
If you love the combination of eggs and yogurt, you might also enjoy our recipe for scrambled eggs with yogurt, which is another quick and healthy breakfast idea.
Convenience
One of the best things about egg cupcakes with yogurt is how easy they are to make ahead. Spend a little time prepping on Sunday, and you’ve got breakfast ready for the entire week. Just grab one (or two!) on your way out the door, and you’re good to go. No more skipping breakfast or settling for less-than-healthy options.
Versatility
Another reason to love this recipe? It’s super customizable. Add your favorite veggies like spinach, bell peppers, or tomatoes. Toss in some cheese for extra flavor, or keep it dairy-free with a plant-based yogurt alternative. The possibilities are endless, making it a recipe you’ll never get tired of.
For more yogurt-based recipes, check out our creamy yogurt scrambled eggs or our Greek yogurt parfait with honey and nuts for a sweet and savory twist.
Ingredients Needed
List of Ingredients
Here’s what you’ll need to make a batch of 12 egg cupcakes with yogurt:
- 6 large eggs
- 1/2 cup plain Greek yogurt (or your favorite yogurt)
- 1/4 cup milk (dairy or plant-based)
- 1/2 teaspoon salt
- 1/4 teaspoon black pepper
- 1/2 cup shredded cheese (optional, for extra flavor)
- 1 cup chopped veggies (spinach, bell peppers, onions, etc.)
- Cooking spray or olive oil (for greasing the muffin tin)
Substitutions
Got dietary restrictions? No problem! Here are some easy swaps:
- Dairy-free yogurt: Use almond, coconut, or soy-based yogurt.
- Egg alternatives: Try a flaxseed or chia seed egg substitute for a vegan version.
- Gluten-free: This recipe is naturally gluten-free, so no substitutions needed!
- Cheese-free: Skip the cheese or use a dairy-free alternative.
With these simple ingredients and substitutions, you can tailor the recipe to fit your needs without sacrificing flavor or texture.
Step-by-Step Recipe
Preparation
- Preheat the Oven: Start by preheating your oven to 375°F (190°C). This ensures your oven is at the right temperature when you’re ready to bake.
- Prepare the Muffin Tin: Lightly grease a 12-cup muffin tin with cooking spray or a brush of olive oil. This prevents the egg cupcakes from sticking and makes cleanup a breeze.
Mixing Ingredients

- Whisk the Eggs: In a large mixing bowl, crack the 6 eggs and whisk them until the yolks and whites are fully combined.
- Add Yogurt and Milk: Stir in the 1/2 cup of Greek yogurt and 1/4 cup of milk. Mix until smooth and creamy.
- Season the Mixture: Add 1/2 teaspoon of salt and 1/4 teaspoon of black pepper. If you’re feeling adventurous, you can also toss in a pinch of paprika, garlic powder, or your favorite herbs.
- Fold in Veggies and Cheese: Gently stir in the 1 cup of chopped veggies and 1/2 cup of shredded cheese (if using). This is where you can get creative—add whatever veggies or extras you love!
Baking Instructions
- Fill the Muffin Cups: Carefully pour the egg mixture into the prepared muffin tin, filling each cup about 3/4 of the way full. This leaves room for the cupcakes to rise slightly as they bake.
- Bake: Place the muffin tin in the preheated oven and bake for 18-20 minutes. You’ll know they’re done when the tops are lightly golden and a toothpick inserted into the center comes out clean.
Cooling and Serving
- Let Them Cool: Once baked, remove the muffin tin from the oven and let the egg cupcakes cool for 5 minutes. This makes them easier to remove from the tin.
- Serve and Enjoy: Use a butter knife to gently loosen the edges, then pop the egg cupcakes out of the tin. Serve them warm, or let them cool completely if you’re meal-prepping for the week.
Tips for Perfect Egg Cupcakes
Consistency
- Avoid Overmixing: When combining the eggs, yogurt, and other ingredients, mix just until everything is incorporated. Overmixing can lead to dense or rubbery egg cupcakes.
- Use Room Temperature Ingredients: Let your eggs and yogurt sit out for about 10-15 minutes before mixing. This helps create a smoother batter and even baking.
Flavor Enhancements
- Experiment with Herbs and Spices: Add fresh herbs like chives, parsley, or dill for a burst of flavor. A pinch of smoked paprika or cumin can also give your egg cupcakes a unique twist.
- Try Different Veggies: Mix and match your favorite veggies for variety. Zucchini, mushrooms, and cherry tomatoes are all great options.
Storage
- Refrigerate for Up to 5 Days: Store your egg cupcakes in an airtight container in the fridge. They make a great grab-and-go breakfast throughout the week.
- Freeze for Longer Storage: Place cooled egg cupcakes in a freezer-safe bag or container. They’ll keep for up to 2 months. To reheat, simply microwave for 30-60 seconds or warm them in the oven at 350°F (175°C) for 10 minutes.
Frequently Asked Questions (FAQs)
Can I Freeze Egg Cupcakes?
Absolutely! Egg cupcakes freeze beautifully. Let them cool completely, then store them in a freezer-safe bag or container. When you’re ready to enjoy, reheat them in the microwave or oven.
What Are the Best Yogurt Brands to Use?
For the creamiest texture, opt for plain Greek yogurt like Fage, Chobani, or Siggi’s. If you prefer a lighter option, regular plain yogurt works too. For dairy-free alternatives, try coconut or almond-based yogurts.
How Long Do They Last in the Fridge?
Egg cupcakes will stay fresh in the fridge for up to 5 days when stored in an airtight container. They’re perfect for meal prepping!
Can I Make Them Without a Muffin Tin?
Yes! If you don’t have a muffin tin, you can use silicone cupcake liners or even small oven-safe ramekins. Just adjust the baking time as needed, since the size and shape of your containers may vary.
Nutritional Information
Caloric Content
Each egg cupcake (based on a batch of 12) contains approximately 80-100 calories, depending on the ingredients you use. This makes them a light yet satisfying breakfast option.
Macronutrient Breakdown
Here’s a general breakdown of the macronutrients per serving:
- Protein: 6-8 grams (thanks to the eggs and yogurt!)
- Fat: 5-6 grams (mostly from the eggs and any added cheese)
- Carbohydrates: 2-3 grams (low-carb and keto-friendly!)
Dietary Considerations
- Keto-Friendly: With minimal carbs and a good amount of healthy fats, these egg cupcakes are perfect for a keto diet.
- Gluten-Free: This recipe is naturally gluten-free, so no worries if you’re avoiding gluten.
- Vegetarian: While not vegan (due to the eggs and yogurt), this recipe is a great option for vegetarians looking for a protein-packed breakfast.
If you’re looking for more gluten-free or vegetarian-friendly recipes, try our Greek yogurt pumpkin bread or our Mediterranean avocado toast for more wholesome meal ideas.
Conclusion

Egg cupcakes with yogurt are a game-changer for busy mornings. They’re easy to make, packed with protein, and endlessly customizable. Whether you’re meal-prepping for the week or looking for a kid-friendly breakfast, this recipe has you covered. Plus, with tips for perfecting the texture, flavor ideas, and storage advice, you’ll be a pro in no time.
Ready to give this recipe a try? Whip up a batch of these egg cupcakes with yogurt and see how they transform your mornings. Don’t forget to share your creations with us—we’d love to hear how you customized them!
Have questions or tips of your own? Drop a comment below! And if you enjoyed this recipe, check out our other healthy breakfast ideas like Mediterranean avocado toast. Happy cooking!

Egg Cupcakes with Yogurt
Equipment
- Muffin Tin (12-cup) For baking the egg cupcakes
- Mixing Bowl To whisk eggs and ingredients together
- Whisk or Fork For mixing the egg batter
- Measuring Cups & Spoons To measure ingredients accurately
- Oven For baking
- Cooking Spray or Silicone Muffin Liners To prevent sticking
Ingredients
- For the Egg Mixture:
- 6 large eggs
- ½ cup plain Greek yogurt or any plain yogurt
- ¼ cup milk dairy or plant-based
- ½ teaspoon salt
- ¼ teaspoon black pepper
- For the Add-ins:
- 1 cup chopped vegetables spinach, bell peppers, onions, etc.
- ½ cup shredded cheese optional, for extra flavor
- Cooking spray or olive oil for greasing the muffin tin
Instructions
1️⃣ Prepare the Oven & Muffin Tin
- Preheat the oven to 375°F (190°C).
- Lightly grease a 12-cup muffin tin with cooking spray or olive oil to prevent sticking.
2️⃣ Mix the Egg Batter
- In a large mixing bowl, crack 6 eggs and whisk until well combined.
- Add Greek yogurt and milk, whisking until smooth and creamy.
- Season with salt and black pepper.
3️⃣ Add Vegetables & Cheese
- Fold in the chopped vegetables and shredded cheese (if using).
4️⃣ Fill the Muffin Cups
- Pour the egg mixture into each muffin cup, filling them about ¾ of the way full.
5️⃣ Bake & Cool
- Bake for 18-20 minutes until the tops are golden brown and a toothpick inserted in the center comes out clean.
- Let the egg cupcakes cool for 5 minutes before removing them from the tin.
6️⃣ Serve or Store
- Enjoy warm or store for later (see storage instructions below).
Notes
Use Fresh Ingredients: Fresh veggies and herbs enhance the flavor.
Prevent Sticking: If not using cooking spray, use silicone muffin liners for easy removal.
Make Ahead: Store in the fridge or freezer for a quick, on-the-go breakfast.